Past themes of Annual Workshops (begun in the second year of the CSIBD) include:
- Host-Microbial Interactions at Mucosal Surfaces in Health and Disease (2007)
- The Phagosome and the Immune/Inflammatory Response (2006)
- Immunological Memory (2005)
- Inventing and Re-Inventing the GI Tract Stem Cells, Development and Differentiation (2004)
- Immune Regulatory Networks (2003)
- Microbial-Mucosal Interactions (2002)
- NF-κB in Host Defense: Genetics, Biochemistry and Function (2001)
- Antigen Presentation at Mucosal Surfaces (2000)
- Paradigms of Microbial-Mucosal Interaction: Physiology and Pathophysiology (1999)
- Lymphocytes and IBD: Current Paradigms of Disease Mechanisms and Treatment (1998)
- Intestinal Epithelium: Immune and Inflammatory Responses (1997)
- Identifying the Genetic Basis of IBD (1996)
- Genetic Models of IBD (1994)
- Bioactive Luminal Peptides (1993)
- Intraepithelial Lymphocytes and their Function (1992)