Researchers Uncover a Protein Deficiency in Neurons of Patients with Neurodegenerative Diseases That Could Be Targeted by New Gene Therapy Approach

BOSTON – TDP-43 is an RNA-binding protein that normally resides in the nucleus of neurons but is abnormally located in the cytoplasm of neurons in most patients with amyotrophic lateral sclerosis (ALS) and frontotemporal dementia, and up to half of patients with Alzheimer’s disease.

A team including investigators at Massachusetts General Hospital (MGH), a founding member of Mass General Brigham (MGB), previously showed that loss of nuclear TDP-43 leads to abnormalities in the RNA that encodes a protein essential for the ability of neurons to regenerate their axons after injury and to keep their connection with muscles to control movements.

In new research published in Science, the group has uncovered the details behind these deleterious effects and has developed an approach to fix them.

The protein that the investigators discovered to be most strongly affected by TDP-43 is called stathmin-2. The absence of nuclear TDP-43 leads to abnormal processing of stathmin-2 RNA, resulting in elevated levels of a non-functional truncated stathmin-2 RNA and a striking loss of stathmin-2 protein in neurons.

“Stathmin-2 disruption is a prominent abnormality observed in patients with a spectrum of neurodegenerative diseases, including almost all instances of sporadic and familial ALS, as well as a large portion of patients with dementia,” says Clotilde Lagier-Tourenne, MD, PhD, an associate professor of Neurology at MGH and Harvard Medical School.

In this latest work, Lagier-Tourenne and her collaborators at the University of California San Diego and the Jackson Laboratory found that nuclear TDP-43 blocks certain sites in stathmin-2 RNA to protect them from being misprocessed (or in technical terms, “misspliced”). This protection, which is critical for the production of normal stathmin-2 protein, is absent when TDP-43 is aberrantly located in the cytoplasm.

To restore this protection, the researchers, in collaboration with IONIS Pharmaceuticals, designed antisense oligonucleotides (ASOs)—short, synthetic, single strands of genetic material that can bind to RNA—that were capable of suppressing abnormal splicing and boosting stathmin-2 protein levels in TDP-43–deficient human neurons. The ASOs essentially took over the role of nuclear TDP-43 by binding to and protecting sites in stathmin-2 RNA.

Finally, in mice that were gene-edited to contain abnormal stathmin-2 RNA, injection of the ASOs into the cerebral fluid (an approach currently used in the clinic for approved ASOs) corrected stathmin-2 RNA missplicing and restored stathmin-2 protein levels.

“Among the most promising translational strategies of gene therapy for neurodegenerative diseases, ASOs have emerged as a viable, life-extending therapeutic approach by correcting fatal gene expression or RNA processing defects. This work demonstrates the in vitro and in vivo efficacy of ASOs in preventing missplicing of stathmin-2 in TDP-43– deficient neurons,” says Lagier-Tourenne. “Our next steps are to further the clinical development of ASOs targeting stathmin-2 misprocessing in TDP-43 proteinopathies and to conduct additional investigations to better understand stathmin-2’s role in neurons.”

Additional study authors include Michael W. Baughn, Ze’ev Melamed, Jone López-Erauskin, Melinda S. Beccari, Karen Ling, Aamir Zuberi, Maximilliano Presa, Elena Gonzalo-Gil, Roy Maimon,
Sonia Vazquez-Sanchez, Som Chaturvedi, Mariana Bravo-Hernández, Vanessa Taupin, Stephen Moore, Jonathan W. Artates, Eitan Acks, I. Sandra Ndayambaje, Ana R. Agra de Almeida Quadros, Paayman Jafar-nejad, Frank Rigo, C. Frank Bennett, Cathleen Lutz, and Don W. Cleveland.

This work was supported by the National Institute of Neurological Disorders and Stroke/ the National Institutes of Health, ALS Finding a Cure, the Massachusetts Center for Alzheimer Therapeutic Science, the Sean M. Healey & AMG Center for ALS at Mass General, U42 Mutant Mouse Resource Research Center, Ruth Kirschstein Institutional National Research Service Award, the Packard Center for ALS Research, the ALS association, MDA development grants, the BrightFocus Foundation, and a Cancer Center Support Grant to the Jackson Laboratory.

 

About the Massachusetts General Hospital

Massachusetts General Hospital, founded in 1811, is the original and largest teaching hospital of Harvard Medical School. The Mass General Research Institute conducts the largest hospital-based research program in the nation, with annual research operations of more than $1 billion and comprises more than 9,500 researchers working across more than 30 institutes, centers and departments. In July 2022, Mass General was named #8 in the U.S. News & World Report list of "America’s Best Hospitals." MGH is a founding member of the Mass General Brigham healthcare system.